Sign in Subscribe

Jillian Rowe

Jillian Rowe

Bioinformatics Pipeline Engineering: Do This Not That: Large Files

Bioinformatics Pipeline Engineering: Do This Not That: Large Files

Overview If you've worked with bioinformatics data, you've likely encountered the dreaded experience: your Python script chugging along, consuming memory at an alarming rate, and then—crash. Out of memory. Your computer becomes unresponsive, and you're left frustrated wondering why your beautiful analysis script

ML/AIOps for Drug Discovery with Boltz2 and MLflow

ML/AIOps for Drug Discovery with Boltz2 and MLflow

Overview If you've ever worked with scientific software you know that it doesn't play well with the other children on the playground. Some of my favorite work related activities are getting rid of code and finding existing code, that I didn't write, to use.

Using LLMs to Query PubMed Knowledgebases for BioMedical Research

Part 1: Creating the Knowledgebase In this article, we'll explore how to leverage large language models (LLMs) to search and query scientific papers from PubMed, a free resource for accessing biomedical and life sciences literature. We'll be using AWS Bedrock as our AI backend, PostgreSQL as

Bioinformatics Solutions on AWS Book - Preview

Bioinformatics Solutions on AWS Book - Preview

This is the introductory chapter to my new book, Bioinformatics Solutions on AWS. (I am aware that the links surrounded by brackets don't work. This is meant to be a book, not a website, but I will use the power of find and sed in order to bend

Bioinformatics Solutions on AWS For Exploratory Analysis

Bioinformatics Solutions on AWS For Exploratory Analysis

This is part 1 of a series I have in the works about Bioinformatics Solutions on AWS. Each part of the series will stand on its own, so you won't be missing anything by reading one part and not the others. So let's dive right in!

Get a Fully Configured Apache Airflow Docker Dev Stack with Bitnami

Get a Fully Configured Apache Airflow Docker Dev Stack with Bitnami

I've been using it for around 2 years now to build out custom workflow interfaces, like those used for Laboratory Information Management Systems (LIMs), Computer Vision pre and postprocessing pipelines, and to set and forget other genomics pipelines. My favorite feature of Airflow is how completely agnostic it

Deploy Dash with Helm on Kubernetes with AWS EKS

Deploy Dash with Helm on Kubernetes with AWS EKS

Today we are going to be talking about Deploying a Dash App on Kubernetes with a Helm Chart using the AWS Managed Kubernetes Service EKS. For this post, I'm going to assume that you have an EKS cluster up and running because I want to focus more on