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Nextflow

Nextflow Hackathon 2026: Adding QC Reports to nf-core/cellpainting (and Why Data Visualization Matters for AI)

Nextflow Hackathon 2026: Adding QC Reports to nf-core/cellpainting (and Why Data Visualization Matters for AI)

Overview I just got back from the Nextflow 2026 Hackathon, and it was exactly what my software engineer soul needed. Two days of focused open-source work, surrounded by people who get genuinely excited about workflow orchestration and reproducible pipelines. More importantly one of the projects was based around cellpainting. What

Bioinformatics Pipeline Engineering: Do This Not That: Split Tasks

Bioinformatics Pipeline Engineering: Do This Not That: Split Tasks

Overview In the last installment of this series, we talked about how to handle large files without bringing down the wrath of your local sys admin. Today we're tackling how to think about breaking up tasks. You've probably written it. I've definitely written it.