Sign in Subscribe

docker

Deploy RShiny with the Rocker/Shiny Docker Image

Deploy RShiny with the Rocker/Shiny Docker Image

If you are deploying RShiny with docker you can roll your own image , or you can use the rocker Dockerhub image . Which solution you go for will depend upon your own needs. Normally, I am using a lot of bioinformatics and/or data science packages and nothing really beats the

Deploy your RShiny App Locally with Docker

Deploy your RShiny App Locally with Docker

My favorite way to deploy RShiny locally is to simply package it into a docker image and run it. Running any application in docker makes it easily transportable, and is a generally acceptable way of distributing applications in 2019. This solution does not require rshiny-server or shinyapps.io, not because

Learn Apache Airflow By Example – 4 Part Series

Learn Apache Airflow By Example – 4 Part Series

Introduction I've been having a blast the last few months learning ApacheAirflow. It's become an indispensable tool in mygetting stuff done toolbox. Follow me on Twitter @jillianerowe, or send me a message with questions, topic suggestions, ice cream recommendations, or general shenanigans. * Learn Apache Airflow By

Dask Tips and Tricks – HighLevelGraphs

Dask Tips and Tricks – HighLevelGraphs

For those of you who have written MPI, this is kind of like that, except you don't have to write MPI!If you would like to know more about basic Dask syntax, check out my blog post on Parallelizing For Loops with Dask. Dask Syntax Normally when using

Dask Tips and Tricks – Parallelize a For Loop

Dask Tips and Tricks – Parallelize a For Loop

If you're in the scientific computing space there's a good chance you've used Python. A relatively recent addition to the family of awesome libraries in Python for Scientific Computing isDask. It is a super cool library that allows you to parallelize your code with

Deploy Bioinformatics Modules on HPC

Deploy Bioinformatics Modules on HPC

Deploying scientific software in an HPC environment can be challenging. Deploying bioinformatics software anyhow anywhere, or say a High Performance Computing Cluster (HPC), can be especially challenging! Life, at least in this regard, has become so much better in the last few years. Anaconda, the scientific python distro along with

Kubernetes on AWS – Getting Started with EKS

Kubernetes on AWS – Getting Started with EKS

AWS Elastic Kubernetes Service (EKS) is a fully managed service AWS launched recently. Elastic services in AWS it means that the number of instances actually in use scales up or down based on the demand. This is first of all seriously cool, and second of all can cut down on