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Building a Natural Language Interface for OpenTargets Data with AI on AWS

Building a Natural Language Interface for OpenTargets Data with AI on AWS

With the advent of AI, knowledge bases and MCP servers I'm less inclined to write code than I ever have been. This blog post details how I built a complete natural language interface for querying OpenTargets data using Amazon Q Developer, AWS infrastructure and the Model Context Protocol

Bioinformatics Solutions on AWS Book - Preview

Bioinformatics Solutions on AWS Book - Preview

This is the introductory chapter to my new book, Bioinformatics Solutions on AWS. (I am aware that the links surrounded by brackets don't work. This is meant to be a book, not a website, but I will use the power of find and sed in order to bend

Bioinformatics Solutions on AWS For Exploratory Analysis

Bioinformatics Solutions on AWS For Exploratory Analysis

This is part 1 of a series I have in the works about Bioinformatics Solutions on AWS. Each part of the series will stand on its own, so you won't be missing anything by reading one part and not the others. So let's dive right in!

Deploy Dash with Helm on Kubernetes with AWS EKS

Deploy Dash with Helm on Kubernetes with AWS EKS

Today we are going to be talking about Deploying a Dash App on Kubernetes with a Helm Chart using the AWS Managed Kubernetes Service EKS. For this post, I'm going to assume that you have an EKS cluster up and running because I want to focus more on

RShiny Authentication with Polished on AWS Kubernetes

RShiny Authentication with Polished on AWS Kubernetes

If you're looking for a hassle free way to add authentication to your RShiny Apps you should check out polished.tech. In their own words: Polished is an R package that adds authentication, user management, and other goodies to your Shiny apps. Polished.tech is the quickest and

Deploy and Scale your Dask Cluster with Kubernetes

Deploy and Scale your Dask Cluster with Kubernetes

Dask is a parallel computing library for Python. I think of it as being like MPI without actually having to write MPI code, which I greatly appreciate! Dask natively scales Python Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love https://dask.org One

Deploy RShiny with Kubernetes using AWS EKS and Terraform

Deploy RShiny with Kubernetes using AWS EKS and Terraform

Deploy RShiny on AWS EKS with Terraform Today we will be deploying the rocker/shiny image on Kubernetes with AWS, or EKS. If you're following along with the deploy RShiny on AWS Series, you'll know that I covered deploying RShiny with a helm chart . Today, I