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Jillian Rowe

Jillian Rowe

Deploy RShiny on AWS EC2

Deploy RShiny on AWS EC2

If you're deploying applications on AWS one of the easier ways to get started is to simply deploy everything on EC2. If you're not familiar with AWS EC2, EC2 instances are compute instances. They are like your (linux) desktop, except that yous spin them up and

Deploy your RShiny App Locally with Docker

Deploy your RShiny App Locally with Docker

My favorite way to deploy RShiny locally is to simply package it into a docker image and run it. Running any application in docker makes it easily transportable, and is a generally acceptable way of distributing applications in 2019. This solution does not require rshiny-server or shinyapps.io, not because

Learn Apache Airflow By Example – 4 Part Series

Learn Apache Airflow By Example – 4 Part Series

Introduction I've been having a blast the last few months learning ApacheAirflow. It's become an indispensable tool in mygetting stuff done toolbox. Follow me on Twitter @jillianerowe, or send me a message with questions, topic suggestions, ice cream recommendations, or general shenanigans. * Learn Apache Airflow By

Deploy your RShiny App on AWS Series - Lightsail

Deploy your RShiny App on AWS Series - Lightsail

If your head is spinning over which deployment scenario to choose for your RShiny app look no further! I have a whole series planned out for you on various deployment options and why you should choose each one. Why should you use AWS Lightsail for RShiny Deployment? Deployment scenarios are

Setup a Bioinformatics Demultiplex Server from Scratch

Setup a Bioinformatics Demultiplex Server from Scratch

Install Demultiplex Software Installing demultiplexing such as bcl2fastq, CellRanger, LongRanger, demuxlet, and whatever else pops up, holds a special place in those that do Bioinformatics and Genomics hearts and potential support groups. It has been enough of an issue in my professional life that I thought I would dedicate a

AWS Elastic Compute Clusters for Genomics

AWS Elastic Compute Clusters for Genomics

Amazon Web Services (AWS) gives you the ability to build out all kinds of cool infrastructure. Databases, web servers,Kubernetes backed applications, Spark clusters, machine learning models, and even High-Performance Computing Clusters with AWS ParallelCluster. Not just clusters, but Elastic Clusters! One of the cooler aspects of using a cloud

Deploy HPC Modules From Bioconda Packages

Deploy HPC Modules From Bioconda Packages

I have been working in Bioinformatics for nearly 10 years, mostly on the computational side of things. I have spent a lot of that time building and installing software. Some of those wounds will never heal! Luckily, along cameAnaconda, the scientific distribution of Python, along with the awesome BioConda who