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Jillian Rowe

Jillian Rowe

RShiny Authentication with Polished on AWS Kubernetes

RShiny Authentication with Polished on AWS Kubernetes

If you're looking for a hassle free way to add authentication to your RShiny Apps you should check out polished.tech. In their own words: Polished is an R package that adds authentication, user management, and other goodies to your Shiny apps. Polished.tech is the quickest and

Manage High Content Screening CellProfiler Pipelines with Apache Airflow

Manage High Content Screening CellProfiler Pipelines with Apache Airflow

If you are running a High Content Screening Pipeline you probably have a lot of moving pieces. As a non exhaustive list you need to: * Trigger CellProfiler Analyses, either from a LIMS system, by watching a filesystem, or some other process. * Keep track of dependencies of CellProfiler Analyses - first

Deploy and Scale your Dask Cluster with Kubernetes

Deploy and Scale your Dask Cluster with Kubernetes

Dask is a parallel computing library for Python. I think of it as being like MPI without actually having to write MPI code, which I greatly appreciate! Dask natively scales Python Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love https://dask.org One

Setup a High Content Screening Imaging Platform with Label Studio

Setup a High Content Screening Imaging Platform with Label Studio

For a few years now I have been on a quest to find a tool I really like for annotating HCS images using a web interface. I've used several tools, including a desktop application called LabelImg, and I have finally found a tool that checks all the boxes

Deploy RShiny with Kubernetes using AWS EKS and Terraform

Deploy RShiny with Kubernetes using AWS EKS and Terraform

Deploy RShiny on AWS EKS with Terraform Today we will be deploying the rocker/shiny image on Kubernetes with AWS, or EKS. If you're following along with the deploy RShiny on AWS Series, you'll know that I covered deploying RShiny with a helm chart . Today, I

Deploy RShiny with the Rocker/Shiny Docker Image

Deploy RShiny with the Rocker/Shiny Docker Image

If you are deploying RShiny with docker you can roll your own image , or you can use the rocker Dockerhub image . Which solution you go for will depend upon your own needs. Normally, I am using a lot of bioinformatics and/or data science packages and nothing really beats the

Deploy RShiny on Kubernetes with a Helm Chart

Deploy RShiny on Kubernetes with a Helm Chart

If you want a very robust solution to deploy your RShiny applications a managed Kubernetes service on AWS, or EKS, is a great choice! Kubernetes has, for now, fully dominated the DevOps and deployment space in terms of deploying containerized services. If you'd like to learn more about